Importance sampling for Lambda-coalescents in the infinitely many sites model
نویسندگان
چکیده
منابع مشابه
Importance sampling for Lambda-coalescents in the infinitely many sites model.
We present and discuss new importance sampling schemes for the approximate computation of the sample probability of observed genetic types in the infinitely many sites model from population genetics. More specifically, we extend the 'classical framework', where genealogies are assumed to be governed by Kingman's coalescent, to the more general class of Lambda-coalescents and develop further Hob...
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The infinitely-many-sites process is often used to model the sequence variability observed in samples of DNA sequences. Despite its popularity, the sampling theory of the process is rather poorly understood. We describe the tree structure underlying the model and show how this may be used to compute the probability of a sample of sequences. We show how to produce the unrooted genealogy from a s...
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ژورنال
عنوان ژورنال: Theoretical Population Biology
سال: 2011
ISSN: 0040-5809
DOI: 10.1016/j.tpb.2011.01.005